mcDETECT tutorial
Tutorial
mcDETECT tutorial: MERSCOPE analysis (step by step)
1. What mcDETECT expects
2. Step A — Construct
mcDETECT
and understand every parameter
3. Step B — Granule detection (pattern from
3_detection.py
)
4. Step C — Profile granules (
profile
)
5. Step D — Manual granule subtyping only (
benchmark_subtyping.ipynb
)
6. Step E — Granule density comparison WT vs AD (
benchmark_subtyping.ipynb
)
7. Step F — Neuropil subdomain analysis, Isocortex (
7_neuropil_subdomains.ipynb
)
8. Quick reference checklist
mcDETECT tutorial
Index
Index