mcDETECT tutorial

Tutorial

  • mcDETECT tutorial: MERSCOPE analysis (step by step)
  • 1. What mcDETECT expects
  • 2. Step A — Construct mcDETECT and understand every parameter
  • 3. Step B — Granule detection (pattern from 3_detection.py)
  • 4. Step C — Profile granules (profile)
  • 5. Step D — Manual granule subtyping only (benchmark_subtyping.ipynb)
  • 6. Step E — Granule density comparison WT vs AD (benchmark_subtyping.ipynb)
  • 7. Step F — Neuropil subdomain analysis, Isocortex (7_neuropil_subdomains.ipynb)
  • 8. Quick reference checklist
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